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Public Research Resources in MEDS

Software Ecosystem

ProjectTypeDocumentation URLRepository URLPaper URLDescription
MEDS SchemaCoreGitHubGitHubOpenReviewA data standard and community for building and sharing EHR machine learning tools
MEDS-ReaderPackageDocsGitHubarXivAn optimized Python package for efficient EHR data processing achieving 10-100x improvements in memory, speed, and disk usage
MEDS-TransformsPackageGitHubA set of functions and scripts for extraction to and transformation/pre-processing of MEDS-formatted data.
MEDS-TabPackageDocsGitHubA library designed for automated tabularization, data preparation with aggregations and time windowing.
ACESPackageDocsGitHubarXivA package and configuration language for reproducible extraction of task cohorts for machine learning over event-stream datasets
MEDS-TorchPackageDocsGitHubAdvancing healthcare machine learning through flexible, robust, and scalable sequence modeling tools.
MEDS-EvaluationPackageGitHubEvaluation pipeline for MEDS.
MEDS-ETLPackageGitHubEfficient ETL that supports OMOP, MIMIC, eICU, PyHealth.
FEMRPackageGitHubA Python package for manipulating longitudinal EHR data for machine learning, with a focus on supporting the creation of foundation models and verifying their presumed benefits in healthcare.
MEDS-DEVBenchmarkGitHubA benchmark for evaluating the performance of machine learning models on MEDS-formatted data.

Datasets in MEDS

Models in MEDS